Abberior Instruments


Selected references for Abberior Dyes:

68. Adelizzi B, Aloi A, Van Zee NJ, Palmans ARA, Meijer EW, Voets IK "Painting Supramolecular Polymers in Organic Solvents by Super-resolution Microscopy" ACS NANO (5):4431-4439, DOI: 10.1021/acsnano.8b00396 (2018)

67. Gao M, Maraspini R, Beutel O, Zehtabian A, Eickholt B, Honigmann A, Ewers H "Expansion Stimulated Emission Depletion Microscopy (ExSTED)" ACS NANO 12(5):4178-4185, DOI: 10.1021/acsnano.8b00776 (2018)

66. Stoldt S, Wenzel D, Kehrein K, Riedel D, Ott M, Jakobs S "Spatial orchestration of mitochondrial translation and OXPHOS complex assembly" Nature Cell Biology 20(5):528-534, DOI: 10.1038/s41556-018-0090-7 (2018)

65. Gobbo F, Bonsignore F, Amodeo R, Cattaneo A, Marchetti L "Site-Specific Direct Labeling of Neurotrophins and Their Receptors: From Biochemistry to Advanced Imaging Applications" Methods in Molecular Biology 1727, Neurotrophic Factors: Methods and Protocols 295-314 (Ed.: Skaper SD), Humana Press/Springer Science+Business Media, DOI: 10.1007/978-1-4939-7571-6_22 (2018)

64. Peng S, Sun R, Wang W, Chen C "Single-Molecule Photoactivation FRET: A General and Easy-To-Implement Approach To Break the Concentration Barrier" Angewandte Chemie Int. Ed. in English 56(24):6882-6885, DOI: 10.1002/anie.201702731 (2017)

63. Samuelsson M, Potrzebowska K, Lehtonen J, Beech JP, Skorova E, Uronen-Hansson H, Svensson L "RhoB controls the Rab11-mediated recycling and surface reappearance of LFA-1 in migrating T lymphocytes" Science Signaling 10(509):eaai8629, DOI: 10.1126/scisignal.aai8629 (2017)

62. Ochmann SE, Vietz C, Trofymchuk K, Acuna GP, Lalkens B, Tinnefeld P "Optical Nanoantenna for Single Molecule-Based Detection of Zika Virus Nucleic Acids without Molecular Multiplication" Analytical Chemistry 89(23):13000-7, DOI: 10.1021/acs.analchem.7b04082 (2017)

61. Maldonado H, Calderon C, Burgos-Bravo F, Kobler O, Zuschratter W, Ramirez O, Härtel S, Schneider P, Quest AF, Herrera-Molina R, Leyton L "Astrocyte-to-neuron communication through integrin-engaged Thy-1/CBP/Csk/Src complex triggers neurite retraction via the RhoA/ROCK pathway" Biochimica et Biophysica Acta - Molecular Cell Research 1864(2):243-54, DOI: 10.1016/j.bbamcr.2016.11.006 (2017)

60. Reindl J, Girst S, Walsh DW, Greubel C, Schwarz B, Siebenwirth C, Drexler GA, Friedl AA, Dollinger G "Chromatin organization revealed by nanostructure of irradiation induced γH2AX, 53BP1 and Rad51 foci" Scientific Reports 7:40616, DOI: 10.1038/srep40616 (2017)

59. Chojnacki J, Waithe D, Carravilla P, Huarte N, Galiani S, Enderlein J, Eggeling C "Envelope glycoprotein mobility on HIV-1 particles depends on the virus maturation state" Nature Communications 8:545, DOI: 10.1038/s41467-017-00515-6 (2017)

58. Mitronova GY, Lukinavičius G, Butkevich AN, Kohl T, Belov VN, Lehnart SE, Hell SW "High-Affinity Functional Fluorescent Ligands for Human β-Adrenoceptors" Scientific Reports 7:12319, DOI: 10.1038/s41598-017-12468-3 (2017)

57. Klauss A, Hille C “Diffraction-Unlimited Fluorescence Imaging with an EasySTED Retrofitted Confocal Microscope” Methods in Molecular Biology 1663, Super-Resolution Microscopy: Methods and Protocols 29-44 (Ed.: Erfle H), Humana Press/Springer Science+Business Media, DOI: 10.1007/978-1-4939-7265-4_4 (2017)

56. Richardson DS, Gregor C, Winter FR, Urban NT, Sahl SJ, Willig KI, Hell SW "SRpHi ratiometric pH biosensors for super-resolution microscopy" Nature Communications 8:577, DOI: 10.1038/s41467-017-00606-4 (2017)

55. Butkevich AN, Lukinavičius G, D'Este E, Hell SW "Cell-Permeant Large Stokes Shift Dyes for Transfection-Free Multicolor Nanoscopy" Journal of the American Chemical Society 139(36):12378-81, DOI: 10.1021/jacs.7b06412 (2017)

54. Butkevich AN, Belov VN, Kolmakov K, Sokolov VV, Shojaei H, Sidenstein SC, Kamin D, Matthias J, Vlijm R, Engelhardt J, Hell SW "Hydroxylated Fluorescent Dyes for Live-Cell Labeling: Synthesis, Spectra and Super-Resolution STED" Chemistry A European Journal 23(50): 12114-9, DOI: 10.1002/chem.201701216 (2017)

53. Oracz J, Westphal V, Radzewicz C, Sahl SJ, Hell SW "Photobleaching in STED nanoscopy and its dependence on the photon flux applied for reversible silencing of the fluorophore" Scientific Reports 7:11354, DOI: 10.1038/s41598-017-09902-x (2017)

52. Tavernaro I, Cavelius C, Peuschel H, Kraegeloh A "Bright fluorescent silica-nanoparticle probes for high-resolution STED and confocal microscopy" Beilstein Journal of Nanotechnology 8:1283-96, DOI: 10.3762/bjnano.8.130 (2017)

51. Reddy-Alla S, Böhme MA, Reynolds E, Beis C, Grasskamp AT, Mampell MM, Maglione M, Jusyte M, Rey U, Babikir H, McCarthy AW, Quentin C, Matkovic T, Bergeron DD, Mushtaq Z, Göttfert F, Owald D, Mielke T, Hell SW, Sigrist SJ, Walter AM "Stable Positioning of Unc13 Restricts Synaptic Vesicle Fusion to Defined Release Sites to Promote Synchronous Neurotransmission" Neuron 95(6):1350-1364.e12, DOI: 10.1016/j.neuron.2017.08.016 (2017)

50. D'Este E, Kamin D, Balzarotti F, Hell SW "Ultrastructural anatomy of nodes of Ranvier in the peripheral nervous system as revealed by STED microscopy" PNAS 114(2):E191-E199, DOI: 10.1073/pnas.1619553114 (2017)

49. Cortese M, Goellner S, Acosta EG, Neufeldt CJ, Oleksiuk O, Lampe M, Haselmann U, Funaya C, Schieber N, Ronchi P, Schorb M, Pruunsild P, Schwab Y, Chatel-Chaix L, Ruggieri A, Bartenschlager R "Ultrastructural Characterization of Zika Virus Replication Factories" Cell Reports 18(9):2113-23, DOI: 10.1016/j.celrep.2017.02.014 (2017)

48. Schedin-Weiss S, Inoue M, Hromadkova L, Teranishi Y, Yamamoto NG, Wiehager B, Bogdanovic N, Winblad B, Sandebring-Matton A, Frykman S, Tjernberg LO "Monoamine oxidase B is elevated in Alzheimer disease neurons, is associated with γ-secretase and regulates neuronal amyloid β-peptide levels" Alzheimer's Research & Therapy 9(1):57, DOI: 10.1186/s13195-017-0279-1 (2017)

47. Sezgin E, Schneider F, Zilles V, Urbančič I, Garcia E, Waithe D, Klymchenko AS, Eggeling C "Polarity-Sensitive Probes for Superresolution Stimulated Emission Depletion Microscopy" Biophysical Journal 113:1-10, DOI: 10.1016/j.bpj.2017.06.050 (2017)

46. Kohli P, Höhne M, Jüngst C, Bertsch S, Ebert LK, Schauss AC, Benzing T, Rinschen MM, Schermer B "The ciliary membrane-associated proteome reveals actin-binding proteins as key components of cilia" EMBO Reports e201643846, DOI: 10.15252/embr.201643846 (2017)

45. Sjöholm J, Bergstrand J, Nilsson T, Šachl R, Ballmoos CV, Widengren J, Brzezinski P "The lateral distance between a proton pump and ATP synthase determines the ATP-synthesis rate" Scientific Reports 7:2926, DOI: 10.1038/s41598-017-02836-4 (2017)

44. Göttfert F, Pleiner T, Heine J, Westphal V, Görlich D, Sahl SJ, Hell SW "Strong signal increase in STED fluorescence microscopy by imaging regions of subdiffraction extent" PNAS 114(9):2125-2130, DOI: 10.1073/pnas.1621495114 (2017)

43. Chamma I, Rossier O, Giannone G, Thoumine O, Sainlos M "Optimized labeling of membrane proteins for applications to super-resolution imaging in confined cellular environments using monomeric streptavidin" Nature Protocols 12(4):748-63, DOI: 10.1038/nprot.2017.010 (2017)

42. Winter FR, Loidolt M, Westphal V, Butkevich AN, Gregor C, Sahl SJ, Hell SW "Multicolour nanoscopy of fixed and living cells with a single STED beam and hyperspectral detection" Scientific Reports 7:46492, DOI: 10.1038/srep46492 (2017)

41. Nizamov S, Sednev MV, Bossi ML, Hebisch E, Frauendorf H, Lehnart SE, Belov VN, Hell SW ""Reduced" Coumarin Dyes with an O-Phosphorylated 2,2-Dimethyl-4-(hydroxymethyl)-1,2,3,4-tetrahydroquinoline Fragment: Synthesis, Spectra, and STED Microscopy" Chemistry A European Journal 22(33):11631-42, DOI: 10.1002/chem.201601252 (2016)

40. Butkevich AN, Mitronova GY, Sidenstein SC, Klocke JL, Kamin D, Meineke DN, D'Este E, Kraemer PT, Danzl JG, Belov VN, Hell SW "Fluorescent Rhodamines and Fluorogenic Carbopyronines for Super-Resolution STED Microscopy in Living Cells" Angewandte Chemie International Edition 55(10):3290-4, DOI: 10.1002/anie.201511018 (2016)

39. Otsuka S, Bui KH, Schorb M, Hossain MJ, Politi AZ, Koch B, Eltsov M, Beck M, Ellenberg J "Nuclear pore assembly proceeds by an inside-out extrusion of the nuclear envelope" eLife 5:e19071, DOI: 10.7554/eLife.19071 (2016)

38. Galiani S, Waithe D, Reglinski K, Cruz-Zaragoza LD, Garcia E, Clausen MP, Schliebs W, Erdmann R, Eggeling C "Super resolution microscopy reveals compartmentalization of peroxisomal membrane proteins" The Journal of Biological Chemistry 291(33):16948-62, DOI: 10.1074/jbc.M116.734038 (2016)

37. Johlin E, Solari J, Mann SA, Wang J, Shimizu TS, Garnett EC "Super-resolution imaging of light-matter interactions near single semiconductor nanowires" Nature Communications 7:13950, DOI: 10.1038/ncomms13950 (2016)

36. Mazkereth N, Rocca F, Schubert JR, Geisler C, Hillman Y, Egner A, Fishelson Z "Complement triggers relocation of Mortalin/GRP75 from mitochondria to the plasma membrane" Immunobiology 221(12):1395-406, DOI: 10.1016/j.imbio.2016.07.005 (2016)

35. Benda A, Aitken H, Davies DS, Whan R, Goldsbury C "STED imaging of tau filaments in Alzheimer's disease cortical grey matter" Journal of Structural Biology 195(3):345-52, DOI: 10.1016/j.jsb.2016.07.003 (2016)

34. Unnersjö-Jess D, Scott L, Blom H, Brismar H "Super-resolution stimulated emission depletion imaging of slit diaphragm proteins in optically cleared kidney tissue" Kidney International 89(1):243-7, DOI: 10.1038/ki.2015.308 (2016)

33. Cortés E, Huidobro PA, Sinclair HG, Guldbrand S, Peveler WJ, Davies T, Parrinello S, Görlitz F, Dunsby C, Neil MA, Sivan Y, Parkin IP, French PM, Maier SA "Plasmonic Nanoprobes for Stimulated Emission Depletion Nanoscopy" ACS Nano 10(11):10454-61, DOI: 10.1021/acsnano.6b06361 (2016)

32. Clausen MP, Sezgin E, Bernardino de la Serna J, Waithe D, Lagerholm BC, Eggeling C "A straightforward approach for gated STED-FCS to investigate lipid membrane dynamics" Methods 88:67-75, DOI: 10.1016/j.ymeth.2015.06.017 (2015)

31. Mitronova GY, Polyakova S, Wurm CA, Kolmakov K, Wolfram T, Meineke DNH, Belov VN, John M, Hell SW "Functionalization of the meso-Phenyl Ring of Rhodamine Dyes Through SNAr with Sulfur Nucleophiles: Synthesis, Biophysical Characterizations, and Comprehensive NMR Analysis" European Journal of Organic Chemistry 2015(2):337-49, DOI: 10.1002/ejoc.201403269 (2015)

30. Galland R, Grenci G, Aravind A, Viasnoff V, Studer V, Sibarita JB "3D high- and super-resolution imaging using single-objective SPIM" Nature Methods 12(7):641-4, DOI: 10.1038/nmeth.3402 (2015)

29. D'Este E, Kamin D, Göttfert F, El-Hady A, Hell SW "STED Nanoscopy Reveals the Ubiquity of Subcortical Cytoskeleton Periodicity in Living Neurons" Cell Reports 10(8):1246-51, DOI: 10.1016/j.celrep.2015.02.007 (2015)

28. Boott CE, Laine RF, Mahou P, Finnegan JR, Leitao EM, Webb SE, Kaminski CF, Manners I "In Situ Visualization of Block Copolymer Self-Assembly in Organic Media by Super-Resolution Fluorescence Microscopy" Chemistry A European Journal Communication 21(51):18539-42, DOI: 10.1002/chem.201504100 (2015)

27. Prado M, Eickel N, De Niz M, Heitmann A, Agop-Nersesian C, Wacker R, Schmuckli-Maurer J, Caldelari R, Janse CJ, Khan SM, May J, Meyer CG, Heussler VT "Long-term live imaging reveals cytosolic immune responses of host hepatocytes against Plasmodium infection and parasite escape mechanisms" Autophagy 11(9):1561-79, DOI: 10.1080/15548627.2015.1067361 (2015)

26. Vreja IC, Nikić I, Göttfert F, Bates M, Kröhnert K, Outeiro TF, Hell SW, Lemke EA, Rizzoli SO "Super-resolution Microscopy of Clickable Amino Acids Reveals the Effects of Fluorescent Protein Tagging on Protein Assemblies" ACS Nano 9(11):11034-41, DOI: 10.1021/acsnano.5b04434 (2015)

25. Klauss A, König M, Hille C "Upgrade of a Scanning Confocal Microscope to a Single-Beam Path STED Microscope" PLOS ONE 10(6):e0130717, DOI: 10.1371/journal.pone.0130717 (2015)

24. Sednev MV, Belov VN, Hell SW "Fluorescent dyes with large Stokes shifts for super-resolution optical microscopy of biological objects: a review" Methods and Applications in Fluorescence 3:042004, DOI: 10.1088/2050-6120/3/4/042004 (2015)

23. Ratz M, Testa I, Hell SW, Jakobs S "CRISPR/Cas9-mediated endogenous protein tagging for RESOLFT sper-resolution microscopy of living human cells" Scientific Reports 5:9592, DOI: 10.1038/srep09592 (2015)

22. Bianchini P, Peres C, Oneto M, Galiani S, Vicidomini G, Diaspro A "STED nanoscopy: a glimpse into the future" Cell & Tissue Research 360(1):143-50, DOI: 10.1007/s00441-015-2146-3 (2015)

21. Enqvist M, Ask EH, Forslund E, Carlsten M, Abrahamsen G, Béziat V, Andersson S, Schaffer M, Spurkland A, Bryceson Y, Önfelt B, Malmberg KJ "Coordinated Expression of DNAM-1 and LFA-1 in Educated NK Cells" The Journal of Immunology 194(9):4518-27, DOI: 10.4049/jimmunol.1401972 (2015)

20. Koch N, Kobler O, Thomas U, Qualmann B, Kessels MM "Terminal Axonal Arborization and Synaptic Bouton Formation Critically Rely on Abp1 and the Arp2/3 Complex" PLOS ONE 9(5):e97692, DOI: 10.1371/journal.pone.0097692 (2014)

19. Vicidomini G, Hernández IC, d'Amora M, Zanacchi FC, Bianchini P, Diaspro A "Gated CW-STED Microscopy: A Versatile Tool for Biological Nanometer Scale Investigation" Methods 66(2):124-30, DOI: 10.1016/j.ymeth.2013.06.029 (2014)

18. Rocha S, De Keersmaecker H, Uji-i H, Hofkens J, Mizuno H "Photoswitchable Fluorescent Proteins for Superresolution Fluorescence Microscopy Circumventing the Diffraction Limit of Light" Methods in Molecular Biology 1076, Fluorescence Spectroscopy and Microscopy: Methods and Protocols 793-812 (Eds.: Engelborghs Y, Visser AJWG), Humana Press/Springer Science+Business Media, DOI: 10.1007/978-1-62703-649-8_36 (2014)

17. Schill H, Nizamov S, Bottanelli F, Bierwagen J, Belov VN, Hell SW "4-Trifluoromethyl-Substituted Coumarins with Large Stokes Shifts: Synthesis, Bioconjugates, and Their Use in Super-Resolution Fluorescence Microscopy" Chemistry A European Journal 19(49):16556-65, DOI: 10.1002/chem.201302037 (2013)

16. Wang IH, Suomalainen M, Andriasyan V, Kilcher S, Mercer J, Neef A, Luedtke NW, Greber UF "Tracking Viral Genomes in Host Cells and Single Molecule Resolution" Cell Host & Microbe 14(4):468-80, DOI: 10.1016/j.chom.2013.09.004 (2013)

15. Chacko JV, Zanacchi FC, Diaspro A "Probing Cytoskeletal Structures by Coupling Optical Superresolution and AFM Techniques for a Correlative Approach" Cytoskeleton 70(11):729-40, DOI: 10.1002/cm.21139 (2013)

14. Wang Y, Kuang C, Gu Z, Xu Y, Li S, Hao X, Liu X "Time-Gated Stimulated Emission Depletion Nanoscopy" Optical Engineering 52(9):093107, DOI: 10.1117/1.OE.52.9.093107 (2013)

13. Li S, Kuang C, Wang Y, Hao X, Xiu P, Xu Y, Liu X "High Speed Optical Nanoscopy by Stimulated Emission Depletion (STED) with Galvo Mirrors" SPIE Proceedings 8911, International Symposium on Photoelectronic Detection and Imaging 2013: Micro/Nano Optical Imaging Technologies and Applications 89110D, DOI: 10.1117/12.2034070 (2013)

12. Olivier N, Keller D, Rajan VS, Gönczy P, Manley S "Simple buffers for 3D STORM microscopy" Biomedical Optics Express 4(6):885-99, DOI: 10.1364/BOE.4.000885 (2013)

11. Göttfert F, Wurm CA, Mueller V, Berning S, Cordes VC, Honigmann A, Hell SW "Coaligned dual-channel STED nanoscopy and molecular diffusion analysis at 20 nm resolution" Biophysical Journal 105(1):L01-3, DOI: 10.1016/j.bpj.2013.05.029 (2013)

10. Blom H, Rönnlund D, Scott L, Westin L, Widengren J, Aperia A, Brismar H "Spatial Distribution of DARPP-32 in Dendritic Spines" PLOS ONE 8(9):e75155, DOI: 10.1371/journal.pone.0075155 (2013)

9. Sednev MV, Wurm CA, Belov VN, Hell SW "Carborhodol: A New Hybrid Fluorophore Obtained by Combination of Fluorescein and Carbopyronine Dye Cores" Bioconjugate Chemistry 24(4):690-700, DOI: 10.1021/bc3006732 (2013)

8. Cella Zanacchi F, Lavagnino Z, Faretta M, Furia L, Diaspro A "Light-Sheet Confined Super-Resolution Using Two-Photon Photoactivation" PLOS ONE 8(7):e67667, DOI: 10.1371/journal.pone.0067667 (2013)

7. Wurm CA, Kolmakov K, Göttfert F, Ta H, Bossi M, Schill H, Berning S, Jakobs S, Donnert G, Belov VN, Hell SW "Novel red fluorophores with superior performance in STED microscopy" Optical Nanoscopy 1:7, DOI: 10.1186/2192-2853-1-7 (2012)

6. Kolmakov K, Wurm CA, Hennig R, Rapp E, Jakobs S, Belov VN, Hell SW "Red-Emitting Rhodamines with Hydroxylated, Sulfonated, and Phosphorylated Dye Residues and Their Use in Fluorescence Nanoscopy" Chemistry A European Journal 18(41):12986-98, DOI: 10.1002/chem.201201168 (2012)

5. Giese AP, Ezan J, Wang L, Lasvaux L, Lembo F, Mazzocco C, Richard E, Reboul J, Borg JP, Kelley MW, Sans N, Brigande J, Montcouquiol M "Gipc1 has a dual role in Vangl2 trafficking and hair bundle integrity in the inner ear" Development 139(20):3775-85, DOI:10.1242/dev.074229 (2012)

4. Balzarotti F, Stefani FD "Plasmonics Meets Far-Field Optical Nanoscopy" ACS Nano 6(6):4580-4 , DOI: 10.1021/nn302306m (2012)

3. Zhu X, Kao YT, Min W "Molecular-Switch-Mediated Multiphoton Fluorescence Microscopy with High-Order Nonlinearity" The Journal of Physical Chemistry Letters 3(15):2082-6, DOI: 10.1021/jz300607c (2012)

2. Müller T, Schumann C, Kraegeloh A "STED Microscopy and its Applications: New Insights into Cellular Processes on the Nanoscale" ChemPhysChem 13(8):1986-2000, DOI: 10.1002/cphc.201100986 (2012)

1. Karlsson T, Turkina MV, Yakymenko O, Magnusson KE, Vikström E "The Pseudomonas aeruginosa N-Acylhomoserine Lactone Quorum Sensing Molecules Target IQGAP1 and Modulate Epithelial Cell Migration" PLOS Pathogens 8(10):e1002953, DOI: 10.1371/journal.ppat.1002953 (2012)